2nd Bonn Conference on Mathematical Life Sciences - Programme

 No. 1 Alfredo Acosta - Optimal Theory in Surveillance and Intervention Strategies for African Swine Fever and Highly Pathogenic Avian Influenza (Infectious Disease Modelling)
No. 3 Nissrin Alachkar - Dissecting CD8+ T cell dynamic responses in adoptive T-cell transfer therapy of melanoma (Mathematical Biology)
No. 5 Nelli Blank-Stein - Immune competence alters neurodevelopmental vulnerability to micro- and nanoplastic exposure in human brain organoids (Organoids and Stem Cell Biology)
No. 7 Karla Bonic-Babic - A comparison of three methods for estimating the probability of a major outbreak (Infectious Disease Modelling)
No. 9 Reindorf Borkor - Improved Autism Spectrum Disorder Detection using Machine Learning Methods: An Integration of fMRI and RNA Seq Data (Bioinformatics and Biostatistics)
No. 11 Aleksandr Bryzgalov - Spectral radius–based analytical evaluation of how daily contact rate fluctuations influence infectious disease dynamics (Infectious Disease Modelling)
No. 13 Benjamin Castellaz* - Bridging Model and Data: A Parametrization-and-Projection Method for Overdetermined Stochastic Inverse Problems in Systems Biology (Modelling of Cellular Pathways)
No. 15 Sunhwa Choi - Replacing Markovian Assumptions with Non-Markovian Reality in Epidemic Parameter Estimation (Infectious Disease Modelling)
No. 17 Isabelle Cochrane - Use of a Scattered Light Integrating Collector (SLIC) for Point of Care Testing to detect bacteria in fluid samples from Prosthetic Joint Infections of the lower limb (Infectious Disease Modelling)
No. 19 Monica Veronica Crankson - Optimal control and cost-effectiveness analysis of a two-strain bacterial meningitis epidemic model: Insights for effective public health interventions (Infectious Disease Modelling)
No. 21 Talip Yasir Demirtas - JANUS: Joint ANalysis for augmentation of clUSter specificity (Bioinformatics and Biostatistics)
No. 23 Janne Frenz* - Simulation of ultra-high dose rate (UHDR) irradiations using a Monte Carlo-based dose engine (Tumor Microenvironment)
No. 25 Ransford Ganyo - Modelling the impact of autoimmune hepetatis on liver cirrhosis progression (Infectious Disease Modelling)
No. 27 Carlotta Felicia Gerstein - Modeling spatially heterogeneous infectious disease spread with chances and challenges (Infectious Disease Modelling)
No. 29 Jonas Guzik - Prediction of linear B cell epitopes using outlier detection and in-silico hydrolysis with protein language models (Bioinformatics and Biostatistics)
No. 31 Manuel Haas - Learning Convex Temporal Regularizers for the Inverse Problem in ECGI (Mathematical Biology)
No. 33 Kushal Haldar - Dynamics of multi-team cell fate decision networks (Mathematical Biology)
No. 35 Carolin Kaffiné - Disentangling Familial and Syndromic Facial Features Using Latent Embedding Analysis (Bioinformatics and Biostatistics)
No. 37 Charles M. Kaumbutha - Advancing Explainability in Machine Learning Models for Alzheimer’s Disease Prediction (Bioinformatics and Biostatistics)
No. 39 Sahil Khan - APP-Driven Vaccine Design: A Quantitative Framework for Optimizing Epitope Presentation (Modelling of Cellular Pathways)
No. 41 Agbatan Fiacre Luc Kouderin - A Cascade Framework for Quantifying the Operational Effectiveness of Insecticide-Treated Nets (ITNs) in Benin. (Infectious Disease Modelling)
No. 43 Sophia Krix - Integrative Single-Cell Modeling and TCR Repertoire Profiling Reveal a Sleep-Immune-Brain Axis in Early Alzheimer’s Disease (Single-Cell Analysis)
No. 45 Torkel Loman - Catalyst: Fast and flexible modeling of reaction networks (Modelling of Cellular Pathways)
No. 47 Pascal Lukas - Determining viral spread and innate immune dynamics in human respiratory epithelium (Infectious Disease Modelling)
No. 49 Karola Mai - ConvexGating infers gating strategies from clusters in single cell cytometry data (Single-Cell Analysis)
No. 51 Robin Müller - Model Based Analysis Of The Mutational Landscape In Antibody Affinity Maturation (Mathematical Biology)
No. 53 Barbora Nemcová - Unjustified Poisson assumptions lead to overconfident estimates of the effective reproductive number (Infectious Disease Modelling)
No. 55 Nicholas Opoku - Understanding the Transmission and Spread of Drug Sensitive and Resistant Strains within a Population: A Mathematical Modelling Approach (Infectious Disease Modelling)
No. 57 Matthias Overmann - Benchmarking precision matrix estimation methods for differential co-expression network analysis (Mathematical Biology)
No. 59 Jörg Peter - Incorporating tumor growth models into physical simulation of radiological, nuclear medicine, and optical imaging systems (Tumor Microenvironment)
No. 61 Sneha Pushpa Ramesan - In silico and patient-derived organoid-based therapy recommendations for colon carcinomas (Organoids and Stem Cell Biology)
No. 63 Sandra Rjeschni - Modeling vertical HIV transmission: a comparison with WHO high-risk assessment in the LIFE studies (Infectious Disease Modelling)
No. 65 Annika Rohde - Glucose Uptake Assay to Study Functional Maturation of Intestinal Organoids (Organoids and Stem Cell Biology)
No. 67 Nina Schmid - Universal differential equations for wastewater-based epidemiology (Infectious Disease Modelling)
No. 69 Angela Shaw - The Inhibitome: A Genome-Wide Map of Inhibitory Gene Relationships (Bioinformatics and Biostatistics)
No. 71 Oladimeji Samuel Sowole - Curvature-Weighted Transmission Improves Network Epidemic Prediction and Control (Infectious Disease Modelling)
No. 73 Jasper Spitzer - The AAtlas - Atlas of the Aorta in Health and Disease (Single-Cell Analysis)
No. 75 Jörn Starruß - Morpheus 3.0: Spatial reaction dynamics in deforming cell shapes (Modelling of Cellular Pathways)
No. 77 Christoph Sticha-Kaiser - A General Deterministic Model of Ordinary Differential Equations for a Broad Variety of Different Diseases (Infectious Disease Modelling)
No. 79 Alexandra Teslya - Evaluating the impact and effectiveness of HIV testing strategies among men who have sex with men in the Netherlands (Infectious Disease Modelling)
No. 81 Jan Tietgen - Comparison of discrete modelling methods for biological neural networks (Mathematical Biology)
No. 83 Francis Didier Tshianyi Mwana Kalala - STAT1–p53 Dynamics Program Cell Fate through p21 and PUMA (Modelling of Cellular Pathways)
No. 85 Gemma van der Voort* - Enhanced neutrophil infiltration and distinct spatial patterning in non-draining lymph nodes under adoptive T cell therapy in murine melanoma (Tumor Microenvironment)
No. 87 Kilian Volmer - Modelling a potential spread of Foot-and-Mouth disease on the German animal trading networks (Infectious Disease Modelling)
No. 89 Karina Wallrafen-Sam - Wastewater-Informed Agent-Based Modeling of Hepatitis E Transmission Dynamics (Infectious Disease Modelling)
No. 91 Nils Waßmuth* - Comparison of Simulation-based Inference Methods for Stochastic Compartmental Models (Infectious Disease Modelling)
No. 93 Daniel Weindl - PEtab, pyPESTO, and AMICI: A Reproducible and Efficient Pipeline for Simulation and Parameter Estimation of Dynamic Models (Modelling of Cellular Pathways)
No. 95 Anna Wendler - Models based on integro-differential equations for epidemic outbreaks (Infectious Disease Modelling)
No. 97 Lennart Wicker - Mathematical Inference of T-cell Trafficking Dynamics from Single-Cell Snapshots (Single-Cell Analysis)
No. 99 Myrthe S. Willemsen - A multi-country comparison of the impact of a potential HIV cure on HIV transmission dynamics (Infectious Disease Modelling)
No. 101 Lin Wouters - Fitting faster: speeding up parameter fitting in stochastic simulators through variance reduction (Mathematical Biology)
No. 103 Irene Yeboah - Intercellular Communication in Plasmodium-infected Liver Tissues: A Spatial Transcriptomics Analyses (Bioinformatics and Biostatistics)
No. 105 Yixuan Zeng - Helminth-Induced Immune Training and Its Potential Impact on Tumor Progression (Tumor Microenvironment)
No. 107 Henrik Zunker - Graph Neural Network Surrogates to leverage Mechanistic Expert Knowledge towards Reliable and Immediate Pandemic Response (Infectious Disease Modelling)

No. 2 Carolina Alvarez Garavito - A Deep Learning Framework for Multi-Site Signal Peptide Cleavage Prediction (Bioinformatics and Biostatistics)
No. 4 Shubhi Ambast - scGNNPred: Explainable graph neural networks for scRNA-seq-based phenotype classification (Bioinformatics and Biostatistics)
No. 6 Jonas Arruda - Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments (Mathematical Biology)
No. 8 Rafael Arutjunjan - Robust Global Model Analysis via the Stochastic Profile Likelihood Approximation (Modelling of Cellular Pathways)
No. 10 Severin Bang - Beyond mechanistic modeling: bridging the gap from signaling to phenotypical readout (Modelling of Cellular Pathways)
No. 12 Florian Bartsch - Graph-Based Modeling of Spatial Organization in Developing and Tumor Tissues (Tumor Microenvironment)
No. 14 Amatus Beyer - Model-Based Design for Morphogen-Driven Spatial Patterns in Synthetic Biology (Mathematical Biology)
No. 16 Sina Dadmand - Deciphering the effect of (R)-2-hydroxyglutarate (2-HG) on the tumor microenvironment of IDH mutant gliomas (Bioinformatics and Biostatistics)
No. 18 Luke De Bretton-Gordon - Learning Density-Dependent Cell-Cycle Regulation with UDEs (Tumor Microenvironment)
No. 20 Domagoj Doresic - Efficient Integration of Binary Qualitative Data into ODE Model Estimation (Mathematical Biology)
No. 22 Suman Gare - Data-driven multi-scale modeling of the tumor micro-environment using interpretable machine learning (Tumor Microenvironment)
No. 24 Mohammadamin Ghasemi - Neural Stem Cells Reroute Metabolism Under SHH Stress in Parkinson’s (Bioinformatics and Biostatistics)
No. 26 Nakshatra Ghosh - Mathematical Modeling of EMT Pathways in Cancer Invasion Through PDEs (Tumor Microenvironment)
No. 28 Sina Glöckner - Multicellular modelling of canonical NF-kB signaling (Modelling of Cellular Pathways)
No. 30 Stephan Grein - Evaluating the Performance of Parallel Optimization Methods for Large-Scale Dynamic Models in Computational Systems Biology (Modelling of Cellular Pathways)
No. 32 Julia Hafenbrak - Understanding CAR-T cell dynamics and therapeutic outcome for diffuse large B-cell lymphoma using mathematical modelling (Modelling of Cellular Pathways)
No. 34 Paul Jonas Jost - Making One Measurement Count: Efficient Dynamic Inference in Label-Based Models (Mathematical Biology)
No. 36 Moritz Kappes - Finite Element Space-Time Total Generalized Variation Regularization with applications to transmembrane potentials in ECGI (Mathematical Biology)
No. 38 Tugberk Kaya - Tissue Microarray-Based Spatial Transcriptomics Defines TME in Cholangiocarcinoma (Tumor Microenvironment)
No. 40 Rosa Kreider - A data-integrated framework for modeling cellular interactions with semi-Markov dynamics (Mathematical Biology)
No. 42 Michelle Krogemann - Random Walks or Directed Paths? – Harvesting the Potential of 3D Modeling to Uncover the Impact of Ontogeny on Alveolar Macrophage Dynamics (Organoids and Stem Cell Biology)
No. 44 Nantia Leonidou* - NephrESA: Machine learning-informed mechanistic mathematical modelling to optimize anaemia treatment (Modelling of Cellular Pathways)
No. 46 Carolin Lindow - Transcriptome-structured population models for neural stem cells (Mathematical Biology)
No. 48 Madhuri Majumder - Design principles of interferon signaling in regulating cell-density-dependent behavior under Type 1 diabetes scenario (Modelling of Endocrine Systems)
No. 50 Perla Mallouk - Mathematical Modeling of Neuroblastoma Growth Based on Tumoroid data (Organoids and Stem Cell Biology)
No. 52 Simon Merkt - Segmentation Strategies for Spatial Transcriptomics in Murine Adipose Tissue (Bioinformatics and Biostatistics)
No. 54 Josua Michael - Identifiability Analysis of Foundational Cardiac Electrophysiology Models: The Noble Model (Mathematical Biology)
No. 56 Luise Nagel - A covariation-based framework to model proteome network dynamics and phenotypic heterogeneity in Candida albicans (Bioinformatics and Biostatistics)
No. 58 Specioza Nambooze - Regulation of Notch signalling dynamics by cis-binding and cell neighborhood relationships. (Modelling of Cellular Pathways)
No. 60 Antonio de Jesus Ortiz Gonzalez - Bayesian Framework for Joint Motion-Compensated 3D MRI Reconstruction (Mathematical Biology)
No. 62 Dilan Pathirana - Groundwork for open-source nonlinear mixed-effects modeling and quantitative systems pharmacology, with SBML and Petab (Bioinformatics and Biostatistics)
No. 64 Clemens Peiter - Modeling Vaccine-Induced Antibody Dynamics Using Nonlinear Mixed-Effects Models in Healthcare Workers (Bioinformatics and Biostatistics)
No. 66 Katrin Perez Anderson - Mapping Lesion Niches: How Microglia Adapt to Recurrent Demyelination (Single-Cell Analysis)
No. 68 Maren Philipps - Modelling the HPA axis: Mechanisms and individual variability in a human cohort (Modelling of Endocrine Systems)
No. 70 Lorena Pohl - Mathematical modelling of electroporation (Mathematical Biology)
No. 72 Moritz Richter - Prediction of Drug Response in Patient-derived Organoids using Large-Scale Mechanistic Models (Organoids and Stem Cell Biology)
No. 74 Thomas Rohde - BaCoN (Balanced Correlation Network) improves prediction of gene buffering (Bioinformatics and Biostatistics)
No. 76 Patience Aba Sakyi - Modelling pattern formation in spatially discrete systems (Modelling of Cellular Pathways)
No. 78 Ivan Savchuk* - Enhancing Clinical Immunology and Disease Diagnostics with Global Swarm Learning (Single-Cell Analysis)
No. 80 Jan Dennis Schering - Simulation-Based Inference of Realistic Intracellular Dynamics in Tissue-Scale CPMs through GPU Parallelization (Mathematical Biology)
No. 82 Joanna Schnorr - A mathematical framework for quantifying T cell expansion in acute and chronic regulatory contexts (Mathematical Biology)
No. 84 Koert Schreurs - Predicting T cell motility from a single image (Tumor Microenvironment)
No. 86 Lea Seep - Decoding Kupffer Cell Programming in Maternal Obesity-induced Fatty Liver via Integrated Multi-Omics and Functional Analysis (Bioinformatics and Biostatistics)
No. 88 Paul Sellentin - Visual Insights into Complex Dynamical Systems via Flux Sensitivity Analysis (Modelling of Cellular Pathways)
No. 90 Shenwei Shi - Embedding-Based Annotation Method in Adipose Tissue Spatial Metabolomics (Bioinformatics and Biostatistics)
No. 92 Priyotosh Sil* - Biologically meaningful regulatory logic enhances the convergence rate in Boolean networks and bushiness of their state transition graph (Mathematical Biology)
No. 94 Lisa Maria Steinheuer - Predicting Vedolizumab Response in IBD Patients Using a Multimodal Machine Learning Approach (Bioinformatics and Biostatistics)
No. 96 Madheshvaran Suresh - Understanding cross-regulation of type I IFN and TNF in innate immune cells using data-driven mathematical modelling (Single-Cell Analysis)
No. 98 Viviane Timmermann - Image-Based Quantification of Autophagosome Biogenesis (Single-Cell Analysis)
No. 100 Marc Vaisband - Uncertainty-Aware Diversity Quantification via the Chinese Restaurant Process (Mathematical Biology)
No. 102 Szilard Varga - Do metrics from ecology help to classify clonal immune dynamics from T cell receptor repertoire data? (Mathematical Biology)
No. 104 Frederik Wieder - Elementary Flux Mode Sampling in Genome Scale Metabolic Networks (Modelling of Cellular Pathways)
No. 106 Vincent Wieland - Mathematical Modeling of the Aryl Hydrocarbon Receptor Pathway (Modelling of Cellular Pathways)
No. 108 Thomas Zerjatke - The digital bone marrow niche – A spatio-temporal in silico model of haematopoietic (stem) cells in their bone marrow microenvironment (Mathematical Biology)